PAZAR DocumentationData formats » ChIP-Seq Peak format
PAZAR ChIP-Seq Peak Format
The PAZAR ChIP-Seq Peak format is for users who are only interested in ChIP-Seq peak data.
It captures (TF) peak information into a tab delimited format that is easy to work with.
Structure of format
Fields are: <chromosome> <peak start coordinate> <peak end coordinate> <peak max coordinate> <PAZAR sequence ID> <score> <score type> <PAZAR TF ID> <TF Name> <species> <PMID> <cell or tissue>
Those 12 fields are tab-delimited.
* The score type can also be thought of as the units of the score
* The peak max coordinate refers to the coordinate at which the peak is at its maximum height
chr1 915920 916350 916127 RS0167109 195.45 MAXHEIGHT TF0001043 MITF_HUMAN Homo sapiens 21258399 Human 501Mel cells