The BACH1_ project in PAZAR Help

Description

Warnatz HJ, Schmidt D, Manke T, Piccini I et al. The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. J Biol Chem 2011 Jul 1;286(26):23521-32. Examination of BACH1 binding in HEK 293T cells by chromatin immunoprecipitation-sequencing (CHIP-seq) with input DNA as control.

Statistics

Regulated genes (or markers): 82
Regulatory sequences (genomic): 84
Regulatory sequences (artificial): 0
Transcription factors: 1
Transcription factor profiles: 0
Annotated publications: 1

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Access project data

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Homo sapiens
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chromosome
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ADAM metallopeptidase with thrombospondin type 1 motif, 17 ENSG00000140470
AFG3 ATPase family gene 3-like 1 , pseudogene ENSG00000223959
aldolase A, fructose-bisphosphate ENSG00000149925
annexin A2 pseudogene 2 ENSG00000231991
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 ENSG00000153317
ATP binding domain 4 ENSG00000134146
aurora kinase A interacting protein 1 ENSG00000175756
BCL2-associated X protein ENSG00000087088
BCL2-like 11 ENSG00000153094
calmodulin 1 ENSG00000198668
chromosome 1 open reading frame 222 ENSG00000142609
chromosome 14 open reading frame 37 ENSG00000139971
chromosome 16 open reading frame 72 ENSG00000182831
chromosome 20 open reading frame 94 ENSG00000149346
coiled-coil domain containing 64 ENSG00000135127
cyclin-dependent kinase 6 ENSG00000105810
cysteine/tyrosine-rich 1 ENSG00000166265
death-associated protein kinase 1 ENSG00000196730
EPS8-like 3 ENSG00000198758
Ewing sarcoma breakpoint region 1 ENSG00000182944
family with sequence similarity 49, member B ENSG00000153310
ferritin, heavy polypeptide 1 ENSG00000167996
ferritin, light polypeptide ENSG00000087086
fibroblast growth factor 1 ENSG00000113578
glucose-6-phosphate isomerase ENSG00000105220
glutamate-cysteine ligase, catalytic subunit ENSG00000001084
glutamate-cysteine ligase, modifier subunit ENSG00000023909
glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 ENSG00000213376
heme oxygenase 1 ENSG00000100292
HtrA serine peptidase 3 ENSG00000170801
importin 7 ENSG00000205339
inositol 1,4,5-trisphosphate receptor, type 2 ENSG00000123104
interferon regulatory factor 2 binding protein-like ENSG00000119669
interferon-related developmental regulator 1 ENSG00000006652
KIAA0355 ENSG00000166398
KIAA1549 ENSG00000122778
leucine rich repeat containing 8 family, member D ENSG00000171492
malic enzyme 1, NADP-dependent, cytosolic ENSG00000065833
matrix-remodelling associated 8 ENSG00000162576
microtubule-associated protein tau ENSG00000186868
NADH dehydrogenase, quinone 2 ENSG00000124588
nitrogen permease regulator-like 3 ENSG00000103148
nucleoporin 153kDa ENSG00000124789
nucleosome assembly protein 1-like 4 ENSG00000205531
phosphoinositide-3-kinase, catalytic, delta polypeptide ENSG00000171608
pleckstrin homology-like domain, family A, member 2 ENSG00000181649
prosaposin ENSG00000197746
protocadherin 9 ENSG00000184226
rhomboid domain containing 3 ENSG00000100263
ribosomal protein, large, P0 pseudogene 6 ENSG00000213553
scavenger receptor cysteine rich domain containing, group B ENSG00000146700
sema domain, immunoglobulin domain 3E ENSG00000170381
sequestosome 1 ENSG00000161011
Small nucleolar RNA U13 ENSG00000238565
solute carrier family 25 , member 10 ENSG00000183048
solute carrier family 48 , member 1 ENSG00000211584
solute carrier family 7, member 11 ENSG00000151012
solute carrier family 9 , member 9 ENSG00000181804
sperm associated antigen 16 ENSG00000144451
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 ENSG00000140557
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ENSG00000127616
synaptojanin 2 ENSG00000078269
syndecan 3 ENSG00000162512
synemin, intermediate filament protein ENSG00000182253
T cell receptor beta variable 20/OR9-2 ENSG00000205274
testis expressed 19 ENSG00000182459
transcription factor binding to IGHM enhancer 3 ENSG00000068323
transketolase ENSG00000163931
transmembrane protein 189 ENSG00000240849
tripartite motif containing 56 ENSG00000169871
tumor necrosis factor receptor superfamily, member 1A ENSG00000067182
tumor necrosis factor, alpha-induced protein 2 ENSG00000185215
U4 spliceosomal RNA ENSG00000199643
U6 spliceosomal RNA ENSG00000206877
U6 spliceosomal RNA ENSG00000223215
U6 spliceosomal RNA ENSG00000251908
v-maf musculoaponeurotic fibrosarcoma oncogene homolog G ENSG00000197063
vault RNA 1-1 ENSG00000199990
vault RNA 1-2 ENSG00000202111
zinc finger protein 3 ENSG00000166526
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BACH1_HUMAN ENST00000548219
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Restrict to sequences where expression is
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ADMC
curated
predicted
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15688014
COMPILED
COMPUTATIONAL PREDICTION
DNASE I FOOTPRINTING
ELECTROPHORETIC MOBILITY SHIFT ASSAY (EMSA)::DIRECT GEL SHIFT
ELECTROPHORETIC MOBILITY SHIFT ASSAY (EMSA)::DIRECT GEL SHIFT WITH WESTERN BLOT DETECTION
ELECTROPHORETIC MOBILITY SHIFT ASSAY (EMSA)::GEL SHIFT COMPETITION
ELECTROPHORETIC MOBILITY SHIFT ASSAY (EMSA)::SUPERSHIFT
ELECTROPHORETIC MOBILITY SHIFT ASSAY (EMSA)::UNKNOWN
EMSA
EXPERT CURATED::LITERATURE DERIVED
GENE CO-EXPRESSION::CO-EXPRESSED GENES DETERMINED THROUGH REPORTER GENE EXPERIMENTS
IN-VIVO HUMAN CD4 ASSAY
MUTAGENESIS::EXONUCLEASE DIGESTION
MUTAGENESIS::EXONUCLEASE III DIGESTION
MUTAGENESIS::OLIGONUCLEOTIDE SYNTHESIS
MUTAGENESIS::PCR
MUTAGENESIS::RESTRICTION ENDONUCLEASE DIGESTION
MUTAGENESIS::SITE-DIRECTED
MUTAGENESIS::UNKNOWN
N/A
NA
PROTEIN BINDING ASSAY :: CHROMATIN IMMUNOPRECIPITATION WITH TAG SEQUENCING (CHIP-TS)
PROTEIN BINDING ASSAY::CHROMATIN IMMUNOPRECIPITATION (CHIP)
PROTEIN BINDING ASSAY::CHROMATIN IMMUNOPRECIPITATION WITH TAG SEQUENCING (CHIP-TS)
PROTEIN BINDING ASSAY::DNA-PROTEIN PRECIPITATION ASSAY
PROTEIN BINDING ASSAY::DNA-PROTEIN PRECIPITATION ASSAY WITH ELISA DETECTION
PROTEIN BINDING ASSAY::DNASE FOOTPRINTING ASSAY
PROTEIN BINDING ASSAY::DNASE FOOTPRINTING COMPETITION ASSAY
PROTEIN BINDING ASSAY::IN-VIVO FOOTPRINTING ASSAY
PROTEIN BINDING ASSAY::METHYLATION INTERFERENCE
PROTEIN BINDING ASSAY::METHYLATION INTERFERENCE ASSAY
PROTEIN BINDING ASSAY::UNKNOWN
PROTEIN BINDING ASSAY::WESTERN BLOT ASSAY
PROTEIN BINDING ASSAY::YEAST 1-HYBRID ASSAY
PROTEIN EXPRESSION ASSAY::ENZYME-LINKED IMMUNOSORBENT ASSAY (ELISA)
PROTEIN EXPRESSION ASSAY::INDIRECT IMMUNOFLUORESCENCE
PROTEIN EXPRESSION ASSAY::LUCIFERASE EXPRESSION ASSAY
PROTEIN EXPRESSION ASSAY::WESTERN BLOT ASSAY
REPORTER GENE ASSAY
REPORTER GENE ASSAY:: TRANSIENT TRANSFECTION GENE EXPRESSION ASSAY
REPORTER GENE ASSAY:: TRANSIENT TRANSFECTION GENE EXPRESSION ASSAY WITH ELISA DETECTION
REPORTER GENE ASSAY::BETA-GLOBIN EXPRESSION ASSAY
REPORTER GENE ASSAY::CHLORAMPHENICOL ACETYLTRANSFERASE (CAT) ASSAY
REPORTER GENE ASSAY::DUAL LUCIFERASE REPORTER GENE ASSAY
REPORTER GENE ASSAY::IN-VITRO VIRUS REPLICATION ASSAY
REPORTER GENE ASSAY::IN-VIVO CHLORAMPHENICOL ACETYLTRANSFERASE (CAT) ASSAY
REPORTER GENE ASSAY::IN-VIVO GENE EXPRESSION ASSAY
REPORTER GENE ASSAY::IN-VIVO GFP EXPRESSION ASSAY
REPORTER GENE ASSAY::IN-VIVO LACZ EXPRESSION ASSAY
REPORTER GENE ASSAY::IN-VIVO LUCIFERASE EXPRESSION ASSAY
REPORTER GENE ASSAY::RABBIT BETA-GLOBIN EXPRESSION ASSAY
REPORTER GENE ASSAY::SECRETED ALKALINE PHOSPHATASE (SEAP) ASSAY
REPORTER GENE ASSAY::SITE-SPECIFIC STABLE TRANSFECTION GFP ASSAY BY CRE-LOX RECOMBINATION
REPORTER GENE ASSAY::STABLE TRANSFECTION CAT ASSAY
REPORTER GENE ASSAY::STABLE TRANSFECTION DSRED ASSAY
REPORTER GENE ASSAY::STABLE TRANSFECTION LACZ ASSAY
REPORTER GENE ASSAY::STABLE TRANSFECTION LUCIFERASE ASSAY
REPORTER GENE ASSAY::STABLY INCORPORATED GFP TRANSGENE ASSAY
REPORTER GENE ASSAY::TARGETED IN-VIVO EXPRESSION ASSAY BY IN UTERO ELECTROPORATION
REPORTER GENE ASSAY::TARGETED IN-VIVO GENE EXPRESSION ASSAY BY NON-VIRAL INJECTION
REPORTER GENE ASSAY::TARGETED IN-VIVO GFP EXPRESSION ASSAY BY VIRAL INJECTION
REPORTER GENE ASSAY::TARGETED IN-VIVO LACZ EXPRESSION ASSAY BY VIRAL INJECTION
REPORTER GENE ASSAY::TRANSIENT TRANSFECTION GENE EXPRESSION ASSAY
REPORTER GENE ASSAY::TRANSIENT TRANSFECTION GFP ASSAY
REPORTER GENE ASSAY::TRANSIENT TRANSFECTION HUMAN GROWTH HORMONE ASSAY
REPORTER GENE ASSAY::TRANSIENT TRANSFECTION LACZ ASSAY
REPORTER GENE ASSAY::TRANSIENT TRANSFECTION LUCIFERASE ASSAY
REPORTER GENE ASSAY::UNKNOWN
REPORTER GENE ASSAY::VIRAL INFECTION LUCIFERASE ASSAY
RNA EXPRESSION ASSAY::IN-VITRO TRANSCRIPTION ASSAY WITH DETECTION BY PRIMER EXTENSION
RNA EXPRESSION ASSAY::NORTHERN BLOT
RNA EXPRESSION ASSAY::PRIMER EXTENSION ANALYSIS WITH POLY(A)+ RNA
RNA EXPRESSION ASSAY::REAL TIME PCR
RNA EXPRESSION ASSAY::REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION (RT-PCR)
RNA EXPRESSION ASSAY::RNASE PROTECTION ASSAY (RPA)
RNA EXPRESSION ASSAY::WHOLE-MOUNT IN SITU HYBRIDIZATION
RNA STABILITY ASSAY::RNA SYNTHESIS BLOCKING
SELEX
SEQUENCE CONSERVATION::CO-EXPRESSED GENE CONSERVATION
SEQUENCE CONSERVATION::CONSERVATION FOUND BY ALIGNMENT
SEQUENCE CONSERVATION::ORTHOLOGOUS GENE CONSERVATION
SITE-DIRECTED MUTAGENESIS
UNKNOWN::CHROMATIN IMMUNOPRECIPITATION (CHIP)
UNKNOWN::UNKNOWN
YEAST ONE-HYBRID
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