PAZAR Documentation
Data formats » PAZAR TF-Target Gene format
PAZAR TF-Target Gene Format
Overview
The PAZAR TF-Target Gene format provides a listing of Transcription Factors and target genes that they putatively regulate
In some cases, the gene is simply the most proximal. This is especially true for projects containing ChIP-Seq data.Structure of format
Fields are: <PAZAR TF ID> <ensembl transcript accession of TF> <TF Name> <PAZAR Gene ID> <ensembl gene accession> <chromosome> <gene start coordinate> <gene end coordinate> <species> <project name> <PMID> <analysis method>
Those 11 fields are tab-delimited.
Example
TF0001043 TF0001043 MITF_HUMAN GS0026328 ENSG00000187634 1 860260 879955 Homo sapiens MITF_Strub 21258399 PROTEIN BINDING ASSAY::CHROMATIN IMMUNOPRECIPITATION (CHIP)