<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pazar SYSTEM "http://www.pazar.info/pazar.dtd">
<pazar>
  <project edit_date="06-12-05" pazar_id="p_0002"
    project_name="example_project2" status="restricted">
    <user affiliation="CMMT" first_name="first_name"
      last_name="last_name" pazar_id="u_0001" username="cmmt_user"/>
  </project>
  <data>
    <construct construct_name="FN-13A" description="random oligo" sequence="gggtgagtcagcg" pazar_id="co_0001"/>
    <construct construct_name="JN-1B" description="random oligo" sequence="taatgacacatca" pazar_id="co_0002"/>
    <construct construct_name="FN-1B" description="random oligo" sequence="ccgtgactcagca" pazar_id="co_0003"/>
    <construct construct_name="FN-5B" description="random oligo" sequence="ttatgacgccgca" pazar_id="co_0004"/>
    <construct construct_name="FM-1B" description="random oligo" sequence="atgtgactgtgca" pazar_id="co_0005"/>
    <construct construct_name="JN-3B" description="random oligo" sequence="atgtgacgtttca" pazar_id="co_0006"/>
    <construct construct_name="JN-4B" description="random oligo" sequence="caatgactgtgca" pazar_id="co_0007"/>
    <construct construct_name="FN-6B" description="random oligo" sequence="gcatcacggtgca" pazar_id="co_0008"/>
    <construct construct_name="FN-3B" description="random oligo" sequence="ctatgactacgca" pazar_id="co_0009"/>
    <construct construct_name="FN-2B" description="random oligo" sequence="ctatgaccatgca" pazar_id="co_0010"/>
    <matrix name="my_matrix" db_accn="nb_01" vectora="2  2  6  0  0 10  0  1  2  3  0  0  9" vectorc="4  2  0  0  1  0  9  1  4  2  0 10  0" vectorg="2  1  4  0  9  0  1  3  3  0  8  0  1" vectort="2  5  0 10  0  0  0  5  1  5  2  0  0" sequence_ids="co_0001 co_0002 co_0003 co_0004 co_0005 co_0006 co_0007 co_0008 co_0009 co_0010" pazar_id="mx_0001">
      <db_source db_name="my_database" assembly="na"/>
    </matrix>
    <gene_source db_accn="ENSG00000129535" description="NRL" pazar_id="gs_0001">
      <db_source db_name="EnsEMBL" assembly="NCBI 35"/>
      <transcript db_accn="ENST00000250471" pazar_id="tr_0001">
        <db_source db_name="EnsEMBL" assembly="NCBI 35"/>
        <tf class="bZIP" family="MAF" pazar_id="tf_0001"/>
      </transcript>
    </gene_source>
    <gene_source db_accn="ENSG00000170345" description="FOS" pazar_id="gs_0002">
      <db_source db_name="EnsEMBL" assembly="NCBI 35"/>
      <transcript db_accn="ENST00000303562" pazar_id="tr_0002">
        <db_source db_name="EnsEMBL" assembly="NCBI 35"/>
        <tf class="bZIP" family="FOS" pazar_id="tf_0002"/>
      </transcript>
    </gene_source>
    <funct_tf funct_tf_name="NRL-FOS heterodimer" pazar_id="fu_0001">
      <tf_unit pazar_id="tu_0001" tf_id="tf_0001" modifications="phosphorylation"/>
      <tf_unit pazar_id="tu_0002" tf_id="tf_0002"/>
    </funct_tf> 
    <interaction pazar_id="in_0001" quantitative="16" scale="percent"/>
    <interaction pazar_id="in_0002" quantitative="11" scale="percent"/>
    <interaction pazar_id="in_0003" quantitative="14" scale="percent"/>
    <interaction pazar_id="in_0004" quantitative="24" scale="percent"/>
    <interaction pazar_id="in_0005" quantitative="21" scale="percent"/>
    <interaction pazar_id="in_0006" quantitative="19" scale="percent"/>
    <interaction pazar_id="in_0007" quantitative="15" scale="percent"/>
  </data>
  <analysis name="analysis_example2">
    <evidence status_evid="provisional" type_evid="curated"/>
    <method method="SELEX"/>
    <ref pmid="7936637"/>
    <input_output>
      <input inputs="fu_0001 co_0001"/>
      <output outputs="in_0001"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0002"/>
      <output outputs="in_0002"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0003"/>
      <output outputs="in_0003"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0004"/>
      <output outputs="in_0004"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0005"/>
      <output outputs="in_0005"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0006"/>
      <output outputs="in_0006"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0007"/>
      <output outputs="in_0006"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0008"/>
      <output outputs="in_0001"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0009"/>
      <output outputs="in_0007"/>
    </input_output>
    <input_output>
      <input inputs="fu_0001 co_0010"/>
      <output outputs="in_0003"/>
    </input_output>
  </analysis>
</pazar>
